In addition to the six boards, there was a Lifan Yuan unique to the Qing government. This institution was established to supervise the administration of Tibet and the Mongol lands. As the empire expanded, it took over administrative responsibility of all minority ethnic groups living in and around the empire, including early contacts with Russia — then seen as a tribute nation. The office had the status of a full ministry and was headed by officials of equal rank. However, appointees were at first restricted only to candidates of Manchu and Mongol ethnicity, until later open to Han Chinese as well.

Who governed the areas of Tibet and Mongolia?